Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021473.1 Corchorus olitorius cultivar O-4 contig21506, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1916
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34


Found at i:1600 original size:2 final size:2

Alignment explanation


    Indices: 1588--1618  Score: 53
    Period size: 2  Copynumber: 15.0  Consensus size: 2

       1578 CTCAACATTC

                                                         
       1588 AT AT AT CAT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT

       1619 CTTTCTAAGT


Statistics
Matches: 28,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   2   26  0.93
   3    2  0.07

ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.