Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021486.1 Corchorus olitorius cultivar O-4 contig21519, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13387
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:12931 original size:20 final size:21

Alignment explanation


    Indices: 12886--12931  Score: 51
    Period size: 19  Copynumber: 2.3  Consensus size: 21

      12876 AATTTATAAA

                          *      
      12886 ACATATAAGAAATATTAAAAT
          1 ACATATAAGAAATAATAAAAT

                      *        * 
      12907 A-ATATAA-ATATAATAAATT
          1 ACATATAAGAAATAATAAAAT

                  
      12926 ACATAT
          1 ACATAT

      12932 TAATTTGTAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 3
        0.78            0.11        0.11

Matches are distributed among these distances:
  19   10  0.48
  20   10  0.48
  21    1  0.05

ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33


Consensus pattern (21 bp):   
ACATATAAGAAATAATAAAAT
Done.