Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021488.1 Corchorus olitorius cultivar O-4 contig21521, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46720

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2046--2170
65
1.9
65
95
0
223
33
9
15
41
1.79
4940--4975
2
19.0
2
88
11
58
50
0
0
50
1.00
4959--5182
105
2.1
104
93
4
380
30
10
8
50
1.66
4978--5146
54
3.2
55
62
20
133
28
13
7
50
1.68
5595--5699
51
2.1
51
96
0
192
31
29
18
20
1.96
7298--7322
12
2.1
12
100
0
50
8
32
20
40
1.81
7754--8240
119
4.1
118
80
8
456
29
17
13
38
1.89
7864--8240
120
3.2
120
82
8
432
29
17
12
40
1.87
9792--9827
19
1.9
18
88
5
54
41
8
22
27
1.82
11693--11757
32
2.1
32
82
8
80
47
15
3
33
1.61
12119--12147
15
1.9
15
100
0
58
72
6
6
13
1.26
19191--19250
30
2.0
31
83
9
79
25
18
6
50
1.71
24840--24870
2
15.5
2
93
0
53
48
48
0
3
1.17
24872--24907
2
18.0
2
100
0
72
50
0
0
50
1.00
28210--28259
21
2.4
21
86
6
66
28
22
4
46
1.70
28545--28572
2
14.0
2
100
0
56
50
0
0
50
1.00
28602--28630
15
1.9
15
100
0
58
55
0
3
41
1.17
32338--32391
11
4.8
11
75
4
54
51
0
0
48
1.00
32339--32389
19
2.7
18
82
8
66
52
0
0
47
1.00
32625--32665
21
2.0
21
90
0
64
41
24
7
26
1.81
34438--34649
33
6.6
33
81
9
197
29
20
21
28
1.98
34438--34622
93
2.0
93
82
4
230
30
21
20
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35273--35318
21
2.2
21
92
0
74
21
30
23
23
1.99
35284--35324
21
2.0
21
95
0
73
24
26
19
29
1.98
38657--38685
13
2.2
13
100
0
58
48
0
37
13
1.43
41674--41714
20
2.0
20
100
0
82
36
4
14
43
1.67
43904--43952
25
2.0
25
100
0
98
14
32
20
32
1.92

Tables:   1

The End!