Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002149.1 Corchorus olitorius cultivar O-4 contig02149, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 661

Length: 1102
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34


Found at i:70 original size:15 final size:15

Alignment explanation


    Indices: 52--81  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

         42 TTTTACCCAC

                 *         
         52 TTTTATTTTTTTTCA
          1 TTTTACTTTTTTTCA

                           
         67 TTTTACTTTTTTTCA
          1 TTTTACTTTTTTTCA

         82 GTAGAATATT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77


Consensus pattern (15 bp):   
TTTTACTTTTTTTCA
Done.