Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021491.1 Corchorus olitorius cultivar O-4 contig21524, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11785
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30


Found at i:11118 original size:15 final size:15

Alignment explanation


    Indices: 11098--11144  Score: 85
    Period size: 15  Copynumber: 3.1  Consensus size: 15

      11088 ACAGAGATTG

                           
      11098 ACAGAAAGCAATTAA
          1 ACAGAAAGCAATTAA

                           
      11113 ACAGAAAGCAATTAA
          1 ACAGAAAGCAATTAA

                   *       
      11128 ACAGAAAACAATTAA
          1 ACAGAAAGCAATTAA

              
      11143 AC
          1 AC

      11145 TTGAAAACAA


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  15   31  1.00

ACGTcount: A:0.62, C:0.15, G:0.11, T:0.13


Consensus pattern (15 bp):   
ACAGAAAGCAATTAA

Found at i:11152 original size:16 final size:15

Alignment explanation


    Indices: 11098--11154  Score: 78
    Period size: 15  Copynumber: 3.7  Consensus size: 15

      11088 ACAGAGATTG

                   *       
      11098 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

                   *       
      11113 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

                           
      11128 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

               *        
      11143 ACTTGAAAACAA
          1 AC-AGAAAACAA

      11155 AGCAAAGTAA


Statistics
Matches: 39,  Mismatches: 2, Indels: 1
        0.93            0.05        0.02

Matches are distributed among these distances:
  15   31  0.79
  16    8  0.21

ACGTcount: A:0.61, C:0.14, G:0.11, T:0.14


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.