Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021492.1 Corchorus olitorius cultivar O-4 contig21525, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8544
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:1583 original size:2 final size:2

Alignment explanation


    Indices: 1576--1601  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       1566 TACAGTTTTA

                                                  
       1576 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

       1602 GATTTGACCT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:6941 original size:30 final size:31

Alignment explanation


    Indices: 6899--6979  Score: 91
    Period size: 30  Copynumber: 2.7  Consensus size: 31

       6889 TTGAGAAGTT

                                            
       6899 TGGTAAGG-TTGTGAAAGTTGA-GAAAAAGAA
          1 TGGTAAGGTTTGTGAAAGTTGAGGAAAAAG-A

                                       * *  
       6929 TGGT-AGGTTTGTGAGAA-TTGAGGAAGATGA
          1 TGGTAAGGTTTGTGA-AAGTTGAGGAAAAAGA

                                  
       6959 TGGTAAGGTTTG-GAAAGTTGA
          1 TGGTAAGGTTTGTGAAAGTTGA

       6980 AAAGAAAAAT


Statistics
Matches: 44,  Mismatches: 2, Indels: 10
        0.79            0.04        0.18

Matches are distributed among these distances:
  29    5  0.11
  30   25  0.57
  31   14  0.32

ACGTcount: A:0.35, C:0.00, G:0.37, T:0.28


Consensus pattern (31 bp):   
TGGTAAGGTTTGTGAAAGTTGAGGAAAAAGA
Done.