Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01021493.1 Corchorus olitorius cultivar O-4 contig21526, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38310
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Found at i:1788 original size:31 final size:31
Alignment explanation
Indices: 1753--1815 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
1743 TAAACACCAA
1753 TTAAAATATATTGAGCACAACTAAACATTGG
1 TTAAAATATATTGAGCACAACTAAACATTGG
*
1784 TTAAAATATATTGAGCACAACTAAATATTGG
1 TTAAAATATATTGAGCACAACTAAACATTGG
1815 T
1 T
1816 GTAGGTAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.32
Consensus pattern (31 bp):
TTAAAATATATTGAGCACAACTAAACATTGG
Found at i:9946 original size:100 final size:100
Alignment explanation
Indices: 9773--9969 Score: 385
Period size: 100 Copynumber: 2.0 Consensus size: 100
9763 TATGTCACCA
9773 TACAAAATTGTGTTTGGAAAGGCATGTCACTTGCCCGTGGAATTAGCACATAAAGCATGGTGGGC
1 TACAAAATTGTGTTTGGAAAGGCATGTCACTTGCCCGTGGAATTAGCACATAAAGCATGGTGGGC
9838 AATCAAGCAATGCAACTTCAACTTTGATCAAGTTG
66 AATCAAGCAATGCAACTTCAACTTTGATCAAGTTG
*
9873 TACAAAATTGTGTTTGGAAAGGCATGTCACTTGTCCGTGGAATTAGCACATAAAGCATGGTGGGC
1 TACAAAATTGTGTTTGGAAAGGCATGTCACTTGCCCGTGGAATTAGCACATAAAGCATGGTGGGC
9938 AATCAAGCAATGCAACTTCAACTTTGATCAAG
66 AATCAAGCAATGCAACTTCAACTTTGATCAAG
9970 CTGGTTTACA
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 96 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (100 bp):
TACAAAATTGTGTTTGGAAAGGCATGTCACTTGCCCGTGGAATTAGCACATAAAGCATGGTGGGC
AATCAAGCAATGCAACTTCAACTTTGATCAAGTTG
Found at i:10761 original size:21 final size:21
Alignment explanation
Indices: 10737--10790 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
10727 GGTAGAATGC
10737 CTCAGCGCCCAGGCGACAAGG
1 CTCAGCGCCCAGGCGACAAGG
10758 CTCAGCGCCCAGGCGACAAGG
1 CTCAGCGCCCAGGCGACAAGG
*
10779 CTCAGCACCCAG
1 CTCAGCGCCCAG
10791 CTCAGCCTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.24, C:0.41, G:0.30, T:0.06
Consensus pattern (21 bp):
CTCAGCGCCCAGGCGACAAGG
Found at i:14685 original size:29 final size:30
Alignment explanation
Indices: 14643--14720 Score: 149
Period size: 30 Copynumber: 2.6 Consensus size: 30
14633 GTGTAGTTAT
14643 AATCATCAATTAGAGTCTTCTCT-AAAAAA
1 AATCATCAATTAGAGTCTTCTCTAAAAAAA
14672 AATCATCAATTAGAGTCTTCTCTAAAAAAA
1 AATCATCAATTAGAGTCTTCTCTAAAAAAA
14702 AATCATCAATTAGAGTCTT
1 AATCATCAATTAGAGTCTT
14721 AGTCGCTTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 23 0.48
30 25 0.52
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.32
Consensus pattern (30 bp):
AATCATCAATTAGAGTCTTCTCTAAAAAAA
Found at i:21384 original size:8 final size:8
Alignment explanation
Indices: 21371--21403 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
21361 AATTAGCAGA
21371 TTGGGAAT
1 TTGGGAAT
21379 TTGGGAAT
1 TTGGGAAT
*
21387 TTGGGAGT
1 TTGGGAAT
21395 TTGGGAAT
1 TTGGGAAT
21403 T
1 T
21404 GGACAATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.39, T:0.39
Consensus pattern (8 bp):
TTGGGAAT
Found at i:31936 original size:11 final size:11
Alignment explanation
Indices: 31920--31952 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
31910 AAATTTTATG
31920 TTTTATACGGA
1 TTTTATACGGA
*
31931 TTTTATATGG-
1 TTTTATACGGA
31941 TTTTATACGGA
1 TTTTATACGGA
31952 T
1 T
31953 ATCCGCTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.24, C:0.06, G:0.18, T:0.52
Consensus pattern (11 bp):
TTTTATACGGA
Found at i:35968 original size:40 final size:40
Alignment explanation
Indices: 35913--36873 Score: 454
Period size: 41 Copynumber: 23.0 Consensus size: 40
35903 CCGACAAGAA
* * **
35913 GAGAATATGAACAACACCTTATGATGAGGAAGGGCAAACT
1 GAGAATTTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* * * *
35953 GAGAATTTAGACAACACCTTCCGGTGGGGAAGGGAAAACT
1 GAGAATTTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* * * *
35993 -AGGATTTTAAACAACACCTTCCGGTGGGGAAGGACAAACT
1 GA-GAATTTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* * *
36033 GAGAATTTAAACAACACCTTCCGGTGGGGAAGGACAAACT
1 GAGAATTTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* * * *
36073 CG-GTATTTAAACGACACCTTCCGGTGGGGAAGGGCAAACT
1 -GAGAATTTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* * * * *
36113 GGGTATTTAAACAACATCTTCCGGTGGGGAAGGGCAAACT
1 GAGAATTTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* * * *
36153 GGGTATTTAAACAACACCTTCCGGTGGGGAAGGGCAAACT
1 GAGAATTTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* * **
36193 GGGTAAAGTAGACTTAGACAACACCTTCCGAT-AGAGAAGGGTGAACT
1 --G---AG-A-ATTTAAACAACACCTTCCGATGAG-GAAGGGCAAACT
* * *
36240 GAGAATTTAAACAACACTTTTCGATGAGGAAGGCCAAACT
1 GAGAATTTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* * * * * *
36280 GGGAAATTAAACAACACCTTCCGGTGGGGAAGGGCAGATT
1 GAGAATTTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* * * *
36320 GGGTAAATTGGACAAAGGCAACAACACCTCCCGATGAGGAAGGGCAAATT
1 GAG--AATT-----TA---AACAACACCTTCCGATGAGGAAGGGCAAACT
* * * * *
36370 GGGAATACT-GACAACACCTTCCAATGAGGAAGGGCAAATT
1 GAGAAT-TTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* * * *
36410 G-GTAAATGCT-GACAACACCTTACGATGAGGAAGGGCAAATT
1 GAG--AAT-TTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* * * * *
36451 GGAAAATGCT-GACAACACCTTCTGATGAGGAAGGGCAAATT
1 -GAGAAT-TTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* *
36492 G-GTAAATGCT-GACAACACCTTCCGATGAGGAAGGGCAAACT
1 GAG--AAT-TTAAACAACACCTTCCGATGAGGAAGGGCAAACT
*
36533 GGACAAAGGCATTGGTAAATACTGTAACACCTTCCGATGAGGAAGGGCAAAACT
1 -G----A-GAATT--T-AA-AC---AACACCTTCCGATGAGGAAGGGC-AAACT
* ** *
36587 GGGCAA---AGGCAACACCTCTCCCGATGAGGAAGGGCAAATT
1 GAG-AATTTAAACAACACCT-T-CCGATGAGGAAGGGCAAACT
* * * *
36627 G-GTAAATGATGACAACACCTTCCGATGAGGAAGGGCAAATT
1 GAG-AATTTA-AACAACACCTTCCGATGAGGAAGGGCAAACT
* * *
36668 G-GTAAATGCT-GACAACACCTTCCGATGAGGAAGGGCAAATT
1 GAG--AAT-TTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* *
36709 G-GTAAATGCT-GACAACACCTTCCGATGAGGAAGGGCAAACT
1 GAG--AAT-TTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* *
36750 G-GTAAATCCT-GACAACACCTTCCGATGAGGAAGGGCAAACT
1 GAG--AAT-TTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* * * * *
36791 GATAAATCCT-GACAACACCTTCCGATGAGGAATGGCTAACT
1 GA-GAAT-TTAAACAACACCTTCCGATGAGGAAGGGCAAACT
* *
36832 -AGTAAATCCT-GACAACACCTTCCGATGAGGAAGGGCAAACT
1 GAG--AAT-TTAAACAACACCTTCCGATGAGGAAGGGCAAACT
36873 G
1 G
36874 GTAATGTTGA
Statistics
Matches: 776, Mismatches: 85, Indels: 118
0.79 0.09 0.12
Matches are distributed among these distances:
39 13 0.02
40 310 0.40
41 328 0.42
42 13 0.02
43 10 0.01
45 2 0.00
46 3 0.00
47 30 0.04
48 5 0.01
49 1 0.00
50 32 0.04
53 24 0.03
54 5 0.01
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (40 bp):
GAGAATTTAAACAACACCTTCCGATGAGGAAGGGCAAACT
Found at i:36055 original size:80 final size:80
Alignment explanation
Indices: 35922--36313 Score: 423
Period size: 80 Copynumber: 4.8 Consensus size: 80
35912 AGAGAATATG
** * * *
35922 AACAACACCTTATGATGAGGAAGGGCAAACTGAGAATTTAGACAACACCTTCCGGTGGGGAAGGG
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGAGAATTTAAACAACACCTTCCGGTGGGGAAGGG
35987 AAAACTAGGAT-TTTA
66 AAAACT-GGATATTTA
*
36002 AACAACACCTTCCGGTGGGGAAGGACAAACTGAGAATTTAAACAACACCTTCCGGTGGGGAA-GG
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGAGAATTTAAACAACACCTTCCGGTGGGGAAGGG
36066 ACAAACTCGG-TATTTA
66 A-AAACT-GGATATTTA
* * * *
36082 AACGACACCTTCCGGTGGGGAAGGGCAAACTGGGTATTTAAACAACATCTTCCGGTGGGGAAGGG
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGAGAATTTAAACAACACCTTCCGGTGGGGAAGGG
* *
36147 CAAACTGGGTATTTA
66 AAAACTGGATATTTA
* * * *
36162 AACAACACCTTCCGGTGGGGAAGGGCAAACTGGGTAAAGTAGACTTAGACAACACCTTCCGATAG
1 AACAACACCTTCCGGTGGGGAAGGGCAAACT--G---AG-A-ATTTAAACAACACCTTCCGGTGG
* **
36227 AGAAGGGTGAACTGAGA-ATTTA
59 GGAAGGGAAAACTG-GATATTTA
* * * * * * *
36249 AACAACACTTTTCGATGAGGAAGGCCAAACTGGGAAATTAAACAACACCTTCCGGTGGGGAAGGG
1 AACAACACCTTCCGGTGGGGAAGGGCAAACTGAGAATTTAAACAACACCTTCCGGTGGGGAAGGG
36314 CAGATTGGGT
Statistics
Matches: 264, Mismatches: 36, Indels: 24
0.81 0.11 0.07
Matches are distributed among these distances:
79 6 0.02
80 190 0.72
81 3 0.01
82 2 0.01
85 2 0.01
87 60 0.23
88 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19
Consensus pattern (80 bp):
AACAACACCTTCCGGTGGGGAAGGGCAAACTGAGAATTTAAACAACACCTTCCGGTGGGGAAGGG
AAAACTGGATATTTA
Found at i:36122 original size:120 final size:118
Alignment explanation
Indices: 35913--36315 Score: 428
Period size: 120 Copynumber: 3.3 Consensus size: 118
35903 CCGACAAGAA
* * ** * * *
35913 GAGAATATGAACAACACCTTATGATGAGGAAGGGCAAACTGAGAATTTAGACAACACCTTCCGGT
1 GAGAATTTAAACAACACCTTCCGGTGGGGAAGGGCAAACTG-GTATTTAGACAACACCTTCCGGT
*
35978 GGGGAAGGGAAAACTAGGATTTTAAACAACACCTTCCGGTGGGGAAGGACAAACT
65 GGGGAAGGGAAAACTGGGA-TTTAAACAACACCTTCCGGTGGGGAAGGACAAACT
* * *
36033 GAGAATTTAAACAACACCTTCCGGTGGGGAAGGACAAACTCGGTATTTAAACGACACCTTCCGGT
1 GAGAATTTAAACAACACCTTCCGGTGGGGAAGGGCAAACT-GGTATTTAGACAACACCTTCCGGT
* * *
36098 GGGGAAGGGCAAACTGGGTATTTAAACAACATCTTCCGGTGGGGAAGGGCAAACT
65 GGGGAAGGGAAAACTGGG-ATTTAAACAACACCTTCCGGTGGGGAAGGACAAACT
* *
36153 GGGTATTTAAACAACACCTTCCGGTGGGGAAGGGCAAACTGGGTAAAGTAGACTTAGACAACACC
1 GAGAATTTAAACAACACCTTCCGGTGGGGAAGGGCAAACT-GGT--A-T----TTAGACAACACC
* * * ** * * * * * *
36218 TTCCGATAGAGAAGGGTGAACTGAGAATTTAAACAACACTTTTCGATGAGGAAGGCCAAACT
58 TTCCGGTGGGGAAGGGAAAACTG-GGATTTAAACAACACCTTCCGGTGGGGAAGGACAAACT
* *
36280 GGGAAATTAAACAACACCTTCCGGTGGGGAAGGGCA
1 GAGAATTTAAACAACACCTTCCGGTGGGGAAGGGCA
36316 GATTGGGTAA
Statistics
Matches: 239, Mismatches: 34, Indels: 13
0.84 0.12 0.05
Matches are distributed among these distances:
120 142 0.59
121 2 0.01
122 1 0.00
123 1 0.00
127 92 0.38
128 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.19
Consensus pattern (118 bp):
GAGAATTTAAACAACACCTTCCGGTGGGGAAGGGCAAACTGGTATTTAGACAACACCTTCCGGTG
GGGAAGGGAAAACTGGGATTTAAACAACACCTTCCGGTGGGGAAGGACAAACT
Found at i:36342 original size:127 final size:125
Alignment explanation
Indices: 35964--36342 Score: 385
Period size: 127 Copynumber: 3.0 Consensus size: 125
35954 AGAATTTAGA
* * * * * *
35964 CAACACCTTCCGGTGGGGAAGGGAAAACT-AGGATTTTAAACAACACCTTCCGGTGGGGAAGGAC
1 CAACACCTTCCGATAGAGAAGGGCAAACTGA-GAATTTAAACAACACTTTCCGGTGGGGAAGGAC
* * * *
36028 AAACTGAGAATTTAAACAACACCTTCCGGTGGGGAAGGACAAACTCGGT--ATT--TAAA-
65 AAACTGGGAATTTAAACAACACCTTCCGGTGGGGAAGGGCAAACTGGGTAAATTGACAAAG
* * * * * * *
36084 CGACACCTTCCGGTGGGGAAGGGCAAACTGGGTATTTAAACAACA-TCTTCCGGTGGGGAAGGGC
1 CAACACCTTCCGATAGAGAAGGGCAAACTGAGAATTTAAACAACACT-TTCCGGTGGGGAAGGAC
* * **
36148 AAACTGGGTATTTAAACAACACCTTCCGGTGGGGAAGGGCAAACTGGGTAAAGTAGACTTAG
65 AAACTGGGAATTTAAACAACACCTTCCGGTGGGGAAGGGCAAACTGGGTAAA-TTGACAAAG
** * * * *
36210 ACAACACCTTCCGATAGAGAAGGGTGAACTGAGAATTTAAACAACACTTTTCGATGAGGAAGGCC
1 -CAACACCTTCCGATAGAGAAGGGCAAACTGAGAATTTAAACAACACTTTCCGGTGGGGAAGGAC
* * *
36275 AAACTGGGAAATTAAACAACACCTTCCGGTGGGGAAGGGCAGATTGGGTAAATTGGACAAAGG
65 AAACTGGGAATTTAAACAACACCTTCCGGTGGGGAAGGGCAAACTGGGTAAATT-GACAAA-G
36338 CAACA
1 CAACA
36343 ACACCTCCCG
Statistics
Matches: 213, Mismatches: 34, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
120 100 0.47
122 1 0.00
123 1 0.00
125 1 0.00
126 1 0.00
127 107 0.50
128 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19
Consensus pattern (125 bp):
CAACACCTTCCGATAGAGAAGGGCAAACTGAGAATTTAAACAACACTTTCCGGTGGGGAAGGACA
AACTGGGAATTTAAACAACACCTTCCGGTGGGGAAGGGCAAACTGGGTAAATTGACAAAG
Found at i:36422 original size:41 final size:41
Alignment explanation
Indices: 36340--36877 Score: 681
Period size: 41 Copynumber: 12.9 Consensus size: 41
36330 GACAAAGGCA
* * *
36340 ACAACACCTCCCGATGAGGAAGGGCAAATTGG-GAATACTG
1 ACAACACCTTCCGATGAGGAAGGGCAAATTGGTAAATGCTG
*
36380 ACAACACCTTCCAATGAGGAAGGGCAAATTGGTAAATGCTG
1 ACAACACCTTCCGATGAGGAAGGGCAAATTGGTAAATGCTG
* *
36421 ACAACACCTTACGATGAGGAAGGGCAAATTGGAAAATGCTG
1 ACAACACCTTCCGATGAGGAAGGGCAAATTGGTAAATGCTG
*
36462 ACAACACCTTCTGATGAGGAAGGGCAAATTGGTAAATGCTG
1 ACAACACCTTCCGATGAGGAAGGGCAAATTGGTAAATGCTG
* * *
36503 ACAACACCTTCCGATGAGGAAGGGCAAACTGGACAAAGGCATTGG
1 ACAACACCTTCCGATGAGGAAGGGCAAATTGG-TAAATGC--T-G
* *
36548 TAAATACTGTAACACCTTCCGATGAGGAAGGGCAAAACTGGGCAAA-G--G
1 -----AC---AACACCTTCCGATGAGGAAGGGC-AAA-TTGGTAAATGCTG
*
36596 -CAACACCTCTCCCGATGAGGAAGGGCAAATTGGTAAATGATG
1 ACAACACCT-T-CCGATGAGGAAGGGCAAATTGGTAAATGCTG
36638 ACAACACCTTCCGATGAGGAAGGGCAAATTGGTAAATGCTG
1 ACAACACCTTCCGATGAGGAAGGGCAAATTGGTAAATGCTG
36679 ACAACACCTTCCGATGAGGAAGGGCAAATTGGTAAATGCTG
1 ACAACACCTTCCGATGAGGAAGGGCAAATTGGTAAATGCTG
* *
36720 ACAACACCTTCCGATGAGGAAGGGCAAACTGGTAAATCCTG
1 ACAACACCTTCCGATGAGGAAGGGCAAATTGGTAAATGCTG
* * *
36761 ACAACACCTTCCGATGAGGAAGGGCAAACTGATAAATCCTG
1 ACAACACCTTCCGATGAGGAAGGGCAAATTGGTAAATGCTG
* * * * *
36802 ACAACACCTTCCGATGAGGAATGGCTAACTAGTAAATCCTG
1 ACAACACCTTCCGATGAGGAAGGGCAAATTGGTAAATGCTG
*
36843 ACAACACCTTCCGATGAGGAAGGGCAAACTGGTAA
1 ACAACACCTTCCGATGAGGAAGGGCAAATTGGTAA
36878 TGTTGAAGGA
Statistics
Matches: 448, Mismatches: 29, Indels: 41
0.86 0.06 0.08
Matches are distributed among these distances:
39 13 0.03
40 35 0.08
41 346 0.77
42 8 0.02
43 8 0.02
44 1 0.00
45 1 0.00
48 1 0.00
50 2 0.00
53 24 0.05
54 7 0.02
55 2 0.00
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.18
Consensus pattern (41 bp):
ACAACACCTTCCGATGAGGAAGGGCAAATTGGTAAATGCTG
Found at i:36570 original size:53 final size:55
Alignment explanation
Indices: 36489--36597 Score: 177
Period size: 54 Copynumber: 2.0 Consensus size: 55
36479 GGAAGGGCAA
*
36489 ATTGGTAAATGCTGACAACACCTTCCGATGAGGAAGGGC-AAACTGGACAAAGGC
1 ATTGGTAAATACTGACAACACCTTCCGATGAGGAAGGGCAAAACTGGACAAAGGC
* *
36543 ATTGGTAAATACTG-TAACACCTTCCGATGAGGAAGGGCAAAACTGGGCAAAGGC
1 ATTGGTAAATACTGACAACACCTTCCGATGAGGAAGGGCAAAACTGGACAAAGGC
36597 A
1 A
36598 ACACCTCTCC
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
53 23 0.45
54 28 0.55
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.17
Consensus pattern (55 bp):
ATTGGTAAATACTGACAACACCTTCCGATGAGGAAGGGCAAAACTGGACAAAGGC
Found at i:36623 original size:217 final size:215
Alignment explanation
Indices: 36342--36870 Score: 690
Period size: 217 Copynumber: 2.5 Consensus size: 215
36332 CAAAGGCAAC
*
36342 AACACCTCCCGATGAGGAAGGGCAAATTGGGAATACTGACAACACCTTCCAATGAGGAAGGGCAA
1 AACACCTCCCGATGAGGAAGGGCAAACTGGGAATAC-GACAACACCTTCCAATGAGGAAGGGCAA
*
36407 ATTGGTAAATGCTGACAACACCTTACGATGAGGAAGGGCAAATTGGAAAATGCTGACAACACCTT
65 ATTGGTAAATGATGACAACACCTTACGATGAGGAAGGGCAAATTGGAAAATGCTGACAACACCTT
*
36472 CTGATGAGGAAGGGCAAATTGGTAAATGCTGACAACACCTTCCGATGAGGAAGGGCAAACTGGAC
130 CCGATGAGGAAGGGCAAATTGGTAAATGCTGACAACACCTTCCGATGAGGAAGGGCAAACTGGAC
36537 AAAGGCATTGGTAAATACTGT
195 AAAGGCATTGGTAAATACTGT
* * *
36558 AACACCTTCCGATGAGGAAGGGCAAAACTGGGCAA-A-GGCAACACCTCTCCCGATGAGGAAGGG
1 AACACCTCCCGATGAGGAAGGGC-AAACTGGG-AATACGACAACACCT-T-CCAATGAGGAAGGG
* *
36621 CAAATTGGTAAATGATGACAACACCTTCCGATGAGGAAGGGCAAATTGGTAAATGCTGACAACAC
62 CAAATTGGTAAATGATGACAACACCTTACGATGAGGAAGGGCAAATTGGAAAATGCTGACAACAC
36686 CTTCCGATGAGGAAGGGCAAATTGGTAAATGCTGACAACACCTTCCGATGAGGAAGGGCAAACTG
127 CTTCCGATGAGGAAGGGCAAATTGGTAAATGCTGACAACACCTTCCGATGAGGAAGGGCAAACTG
* * *
36751 G-TAAA-TC-CT-G-----AC---
192 GACAAAGGCATTGGTAAATACTGT
* ** * * * *
36763 AACACCTTCCGATGAGGAAGGGCAAACTGATAAATCCTGACAACACCTTCCGATGAGGAATGGCT
1 AACACCTCCCGATGAGGAAGGGCAAACTG-GGAATAC-GACAACACCTTCCAATGAGGAAGGGCA
* * ** *
36828 AACTAGTAAATCCTGACAACACCTTCCGATGAGGAAGGGCAAA
64 AATTGGTAAATGATGACAACACCTTACGATGAGGAAGGGCAAA
36871 CTGGTAATGT
Statistics
Matches: 284, Mismatches: 21, Indels: 27
0.86 0.06 0.08
Matches are distributed among these distances:
204 8 0.03
205 76 0.27
206 1 0.00
207 9 0.03
208 2 0.01
213 1 0.00
214 1 0.00
215 10 0.04
216 26 0.09
217 148 0.52
218 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.18
Consensus pattern (215 bp):
AACACCTCCCGATGAGGAAGGGCAAACTGGGAATACGACAACACCTTCCAATGAGGAAGGGCAAA
TTGGTAAATGATGACAACACCTTACGATGAGGAAGGGCAAATTGGAAAATGCTGACAACACCTTC
CGATGAGGAAGGGCAAATTGGTAAATGCTGACAACACCTTCCGATGAGGAAGGGCAAACTGGACA
AAGGCATTGGTAAATACTGT
Done.