Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021496.1 Corchorus olitorius cultivar O-4 contig21529, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2838
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.37


Found at i:58 original size:22 final size:22

Alignment explanation


    Indices: 13--60  Score: 62
    Period size: 22  Copynumber: 2.2  Consensus size: 22

          3 CAATTTTTTT

                       *       *  
         13 ATTTAAAAAAATTGATTTTCGA
          1 ATTTAAAAAAAATGATTTTAGA

                                   
         35 ATTTAAAAAAAATG-TTTTGAGA
          1 ATTTAAAAAAAATGATTTT-AGA

                
         57 ATTT
          1 ATTT

         61 TGAATTTTTC


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  21    4  0.17
  22   19  0.83

ACGTcount: A:0.46, C:0.02, G:0.10, T:0.42


Consensus pattern (22 bp):   
ATTTAAAAAAAATGATTTTAGA

Found at i:2565 original size:12 final size:13

Alignment explanation


    Indices: 2547--2576  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

       2537 GTTTTCTTTA

                         
       2547 ATTTTCTTGATTG
          1 ATTTTCTTGATTG

                         
       2560 -TTTTCTTGATTG
          1 ATTTTCTTGATTG

                 
       2572 ATTTT
          1 ATTTT

       2577 AATTGCTAGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.13, C:0.07, G:0.13, T:0.67


Consensus pattern (13 bp):   
ATTTTCTTGATTG
Done.