Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021497.1 Corchorus olitorius cultivar O-4 contig21530, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53188

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1444--1468
11
2.3
11
100
0
50
8
0
28
64
1.22
1488--1538
24
2.2
24
82
10
61
50
1
9
37
1.47
4624--4729
39
2.7
39
94
0
185
38
16
2
41
1.64
4608--4726
21
6.0
21
73
11
106
40
16
3
39
1.65
24069--24421
76
4.7
76
85
2
433
18
26
34
20
1.96
24039--24421
152
2.6
150
83
2
484
18
25
35
21
1.95
30309--30338
16
1.9
15
93
6
51
6
56
23
13
1.60
41532--41566
2
17.5
2
100
0
70
48
0
0
51
1.00

Tables:   1

The End!