Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021501.1 Corchorus olitorius cultivar O-4 contig21534, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2128
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26


Found at i:489 original size:36 final size:36

Alignment explanation


    Indices: 442--511  Score: 131
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        432 ATTTTCTCCA

                                                
        442 ATTTATTTCATCAATGTCTAAAGACATTGGCTAATC
          1 ATTTATTTCATCAATGTCTAAAGACATTGGCTAATC

                               *              
        478 ATTTATTTCATCAATGTCTCAAGACATTGGCTAA
          1 ATTTATTTCATCAATGTCTAAAGACATTGGCTAA

        512 ATCTCCATCT


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  36   33  1.00

ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39


Consensus pattern (36 bp):   
ATTTATTTCATCAATGTCTAAAGACATTGGCTAATC
Done.