Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021502.1 Corchorus olitorius cultivar O-4 contig21535, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3716
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.34


Found at i:177 original size:17 final size:18

Alignment explanation


    Indices: 155--190  Score: 65
    Period size: 17  Copynumber: 2.1  Consensus size: 18

        145 GGCCTATTTC

                              
        155 TCTTTCTTT-CTTTTTTT
          1 TCTTTCTTTCCTTTTTTT

                              
        172 TCTTTCTTTCCTTTTTTT
          1 TCTTTCTTTCCTTTTTTT

             
        190 T
          1 T

        191 GTTTGGCTGG


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  17    9  0.50
  18    9  0.50

ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81


Consensus pattern (18 bp):   
TCTTTCTTTCCTTTTTTT

Found at i:1232 original size:47 final size:47

Alignment explanation


    Indices: 1178--1271  Score: 179
    Period size: 47  Copynumber: 2.0  Consensus size: 47

       1168 GTAATTGAAC

                     *                                     
       1178 TCTTATGTTGACCCCTCTCACAAGAAACTTTGCAAGTTTTCATAACA
          1 TCTTATGTTAACCCCTCTCACAAGAAACTTTGCAAGTTTTCATAACA

                                                           
       1225 TCTTATGTTAACCCCTCTCACAAGAAACTTTGCAAGTTTTCATAACA
          1 TCTTATGTTAACCCCTCTCACAAGAAACTTTGCAAGTTTTCATAACA

       1272 CTTCATTCGT


Statistics
Matches: 46,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  47   46  1.00

ACGTcount: A:0.31, C:0.26, G:0.10, T:0.34


Consensus pattern (47 bp):   
TCTTATGTTAACCCCTCTCACAAGAAACTTTGCAAGTTTTCATAACA
Done.