Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021503.1 Corchorus olitorius cultivar O-4 contig21536, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 921

Length: 1536
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.35


Found at i:891 original size:23 final size:23

Alignment explanation


    Indices: 865--919  Score: 101
    Period size: 23  Copynumber: 2.4  Consensus size: 23

        855 GTTGTGTTTG

                                   
        865 GTTTTTGTTATCTCTTGTTCCTC
          1 GTTTTTGTTATCTCTTGTTCCTC

                    *              
        888 GTTTTTGTCATCTCTTGTTCCTC
          1 GTTTTTGTTATCTCTTGTTCCTC

                     
        911 GTTTTTGTT
          1 GTTTTTGTT

        920 TTACTTCCGT


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  23   30  1.00

ACGTcount: A:0.04, C:0.20, G:0.15, T:0.62


Consensus pattern (23 bp):   
GTTTTTGTTATCTCTTGTTCCTC
Done.