Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021504.1 Corchorus olitorius cultivar O-4 contig21537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25658

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1334--1437
52
2.0
52
100
0
208
30
28
19
21
1.97
2998--3043
8
5.8
8
92
0
74
50
21
17
10
1.77
2991--3044
24
2.2
24
93
0
90
48
20
18
12
1.81
4427--4585
76
2.1
77
92
2
266
50
0
13
34
1.47
6389--6430
19
2.3
18
84
8
57
35
2
0
61
1.09
7466--7510
2
22.5
2
100
0
90
48
0
0
51
1.00
15157--15202
6
7.8
6
95
4
85
84
15
0
0
0.62
21088--21148
22
2.8
22
77
5
61
40
8
8
42
1.64
21167--21234
22
3.0
22
77
10
75
45
11
5
36
1.65
22872--23322
22
20.6
22
74
12
279
37
15
9
37
1.81
23053--23176
45
2.8
44
83
8
151
38
16
8
36
1.79
23120--23234
60
1.9
61
87
1
169
34
16
7
40
1.77
23311--23366
21
2.7
21
97
0
103
26
12
14
46
1.80
23445--23677
22
10.5
22
71
8
116
33
13
10
42
1.79
23469--23677
22
9.5
22
72
6
136
33
14
10
42
1.80
23447--23610
44
3.7
43
77
6
143
32
12
10
43
1.77
23447--23610
88
1.9
88
83
2
213
32
12
10
43
1.77
24025--25100
537
2.0
539
90
3
1704
34
14
18
32
1.91
25310--25358
22
2.2
22
88
0
71
30
14
4
51
1.61
25440--25627
45
4.2
42
78
15
173
37
17
10
35
1.84
25436--25653
22
10.0
22
75
14
177
37
17
9
34
1.83

Tables:   1

The End!