Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021509.1 Corchorus olitorius cultivar O-4 contig21542, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85730

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
693--948
124
2.0
128
85
9
355
37
11
1
49
1.50
934--972
14
2.9
13
80
3
51
41
2
2
53
1.28
7995--8047
15
3.5
15
76
19
65
41
1
0
56
1.10
7991--8047
30
2.0
30
93
6
100
40
1
0
57
1.09
7990--8058
7
9.6
7
75
16
52
40
1
0
57
1.07
8093--8135
21
2.0
21
86
0
59
39
9
34
16
1.80
16223--16272
21
2.4
21
83
6
57
38
12
24
26
1.90
43541--43571
2
15.5
2
100
0
62
51
48
0
0
1.00
49191--49232
21
2.0
20
86
4
57
42
0
16
40
1.48
50490--50558
34
2.0
34
100
0
138
44
0
11
43
1.40
50507--50568
2
33.0
2
82
12
60
46
0
6
46
1.28
53217--53246
10
3.1
10
90
9
53
90
0
10
0
0.47
53217--53246
9
3.2
9
95
4
51
90
0
10
0
0.47
59979--60473
67
7.4
67
80
7
467
23
18
16
41
1.90
68348--68395
21
2.3
21
92
0
78
8
27
54
10
1.63

Tables:   1

The End!