Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021510.1 Corchorus olitorius cultivar O-4 contig21543, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11395

Tables:   1   

This is table  1  of  1  ( 7 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
387--707
178
1.8
178
85
4
459
34
15
16
33
1.90
5215--5255
21
2.0
21
90
9
66
34
9
24
31
1.88
6310--6436
66
1.9
66
90
3
202
26
8
22
41
1.83
6310--6405
33
2.9
33
69
9
88
29
9
21
39
1.85
6322--6451
33
3.9
33
73
7
104
26
8
22
43
1.81
10776--10855
29
2.7
30
88
3
108
28
18
12
40
1.87
10979--11074
30
3.1
30
88
5
138
43
11
13
31
1.79

Tables:   1

The End!