Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021512.1 Corchorus olitorius cultivar O-4 contig21545, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17051

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1870--1909
21
1.9
21
90
10
64
32
27
10
30
1.89
9394--9507
33
3.5
32
81
4
129
42
23
9
23
1.83
9394--9520
66
1.9
66
90
0
200
42
22
10
25
1.84
12379--12500
16
7.7
15
72
13
93
7
17
37
37
1.78
12411--12495
32
2.7
32
90
0
125
9
16
37
36
1.81
12380--12500
48
2.5
48
73
16
117
7
17
38
37
1.78
14188--14217
11
2.7
11
89
0
51
46
6
40
6
1.56
14594--14635
21
2.0
21
100
0
84
33
28
19
19
1.96
15973--16012
17
2.4
17
87
8
55
37
20
20
22
1.94
16407--16453
20
2.3
20
92
3
76
59
4
27
8
1.45
16699--16733
17
2.1
17
100
0
70
40
11
5
42
1.65

Tables:   1

The End!