Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021519.1 Corchorus olitorius cultivar O-4 contig21552, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59089

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5202--5307
32
3.3
32
86
2
133
6
16
42
34
1.74
5217--5307
16
5.7
16
74
10
71
6
14
40
38
1.72
5623--5694
31
2.3
31
75
17
78
61
8
4
26
1.43
6150--6193
16
2.8
16
89
0
70
6
15
40
36
1.74
6430--6487
29
2.0
29
93
0
98
31
3
6
58
1.41
11033--11082
20
2.5
20
83
0
64
64
0
32
4
1.12
13910--14043
21
6.4
21
92
1
191
29
17
26
26
1.97
16053--16082
14
2.1
15
93
6
53
13
13
6
66
1.43
17655--17696
21
2.0
21
100
0
84
33
28
19
19
1.96
21882--21921
17
2.2
17
86
8
53
45
5
22
27
1.73
39395--39435
21
2.0
21
85
9
57
34
9
26
29
1.88
42612--42651
18
2.1
18
86
9
53
67
5
20
7
1.34
47441--47543
31
3.4
30
93
5
165
47
7
3
40
1.51
47441--47537
30
3.2
31
92
7
164
45
8
3
43
1.49
48194--48228
17
2.1
17
88
0
52
54
2
5
37
1.39
49319--49354
9
3.9
9
85
7
54
30
0
27
41
1.56
49317--49353
19
1.9
19
100
0
74
27
0
29
43
1.55
52530--52571
18
2.3
18
87
0
57
50
33
11
4
1.60
56310--56351
22
1.9
22
85
0
57
26
35
16
21
1.94
57399--57439
21
2.0
21
85
9
57
34
9
26
29
1.88

Tables:   1

The End!