Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021521.1 Corchorus olitorius cultivar O-4 contig21554, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10046
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33


Found at i:8404 original size:28 final size:28

Alignment explanation


    Indices: 8362--8445  Score: 132
    Period size: 28  Copynumber: 3.0  Consensus size: 28

       8352 ACTATTGGAT

                                         
       8362 TTTTGCCATTATGATTGGTGATAATAATA
          1 TTTT-CCATTATGATTGGTGATAATAATA

                     *            *     
       8391 TTTTCCATTGTGATTGGTGATAGTAATA
          1 TTTTCCATTATGATTGGTGATAATAATA

               *                       
       8419 TTTGCCATTATGATTGGTGATAATAAT
          1 TTTTCCATTATGATTGGTGATAATAAT

       8446 TACCATGCTA


Statistics
Matches: 50,  Mismatches: 5, Indels: 1
        0.89            0.09        0.02

Matches are distributed among these distances:
  28   46  0.92
  29    4  0.08

ACGTcount: A:0.29, C:0.07, G:0.19, T:0.45


Consensus pattern (28 bp):   
TTTTCCATTATGATTGGTGATAATAATA
Done.