Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021525.1 Corchorus olitorius cultivar O-4 contig21558, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2076
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36


Found at i:195 original size:21 final size:21

Alignment explanation


    Indices: 171--212  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        161 TAAACTTCAC

                                 
        171 TATTAGTTATTGTATAGTTTT
          1 TATTAGTTATTGTATAGTTTT

                                 
        192 TATTAGTTATTGTATAGTTTT
          1 TATTAGTTATTGTATAGTTTT

        213 CCTTTAATCA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.24, C:0.00, G:0.14, T:0.62


Consensus pattern (21 bp):   
TATTAGTTATTGTATAGTTTT

Found at i:1075 original size:12 final size:12

Alignment explanation


    Indices: 1058--1083  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1048 TATATACATA

                        
       1058 ATAATAATAATG
          1 ATAATAATAATG

                        
       1070 ATAATAATAATG
          1 ATAATAATAATG

              
       1082 AT
          1 AT

       1084 TCCAAATATT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35


Consensus pattern (12 bp):   
ATAATAATAATG
Done.