Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021526.1 Corchorus olitorius cultivar O-4 contig21559, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56412

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2440--2582
49
3.0
47
82
9
171
51
5
15
27
1.66
3850--3889
9
4.7
9
90
6
57
30
17
0
52
1.45
3850--3889
17
2.4
17
87
8
55
30
17
0
52
1.45
10690--10728
5
8.6
5
78
21
50
56
0
20
23
1.42
10686--10722
8
4.4
8
90
10
56
54
0
21
24
1.45
10998--11245
121
2.0
126
89
8
382
37
11
1
50
1.46
12647--12671
1
25.0
1
100
0
50
100
0
0
0
0.00
27639--27873
125
1.9
121
86
5
337
45
21
8
24
1.78
29393--29438
24
1.9
24
86
0
65
73
0
6
19
1.04
55206--55711
254
2.0
252
95
0
913
25
20
17
36
1.94

Tables:   1

The End!