Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021527.1 Corchorus olitorius cultivar O-4 contig21560, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21852

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
146--666
252
2.1
252
92
1
848
36
17
19
25
1.94
1924--1973
15
3.3
15
78
13
57
46
2
48
4
1.32
3499--3539
16
2.6
16
81
14
57
4
34
2
58
1.32
5840--5917
38
2.1
38
100
0
156
35
12
10
41
1.77
13223--13270
16
3.0
16
93
0
87
25
35
14
25
1.94
13683--13709
4
6.8
4
100
0
54
25
0
0
74
0.83
15738--15769
6
5.3
6
100
0
64
31
53
0
15
1.43
16282--16382
50
2.0
50
98
0
193
27
9
12
49
1.73
16961--16991
11
2.8
11
95
0
53
0
3
19
77
0.90
17142--17202
29
2.1
29
82
8
72
24
14
1
59
1.45
17693--17798
53
2.0
53
94
0
185
27
26
11
34
1.90

Tables:   1

The End!