Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021528.1 Corchorus olitorius cultivar O-4 contig21561, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38236

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12512--12600
25
3.5
25
62
8
63
30
7
30
31
1.86
16239--16282
23
1.9
23
86
9
63
56
2
0
40
1.11
18258--18291
17
1.9
18
88
5
52
20
20
14
44
1.87
26712--26736
7
3.6
7
100
0
50
44
0
12
44
1.41
26848--27010
60
2.8
60
82
1
195
32
14
13
39
1.84
26877--27043
60
2.8
60
79
2
183
32
13
14
39
1.85
31678--31715
20
1.9
20
88
0
58
2
21
2
73
1.07
34236--34272
16
2.2
18
90
9
60
18
16
2
62
1.45
34853--34935
43
1.9
44
85
2
114
49
18
6
26
1.70

Tables:   1

The End!