Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002153.1 Corchorus olitorius cultivar O-4 contig02153, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 881

Length: 1469
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36


Found at i:510 original size:6 final size:6

Alignment explanation


    Indices: 493--531  Score: 62
    Period size: 6  Copynumber: 6.5  Consensus size: 6

        483 GTACTTTTAT

                                                          
        493 ATATAG -TATAG ATATAG ATATAG ATATAG ATATGAG ATA
          1 ATATAG ATATAG ATATAG ATATAG ATATAG ATAT-AG ATA

        532 ATTTTTTCTA


Statistics
Matches: 31,  Mismatches: 0, Indels: 3
        0.91            0.00        0.09

Matches are distributed among these distances:
   5    5  0.16
   6   21  0.68
   7    5  0.16

ACGTcount: A:0.49, C:0.00, G:0.18, T:0.33


Consensus pattern (6 bp):   
ATATAG

Done.