Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021532.1 Corchorus olitorius cultivar O-4 contig21565, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1899
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33


Found at i:1264 original size:16 final size:14

Alignment explanation


    Indices: 1238--1288  Score: 57
    Period size: 14  Copynumber: 3.3  Consensus size: 14

       1228 TTTCCTAATA

                          
       1238 TTTTTTTCCTTTCT
          1 TTTTTTTCCTTTCT

                              
       1252 TTTTCTCTTCCTTATTCT
          1 TTTT-T-TTCC-T-TTCT

                          
       1270 TTTTTTTCCTTTCT
          1 TTTTTTTCCTTTCT

                 
       1284 ATTTT
          1 -TTTT

       1289 ATTTTTTATT


Statistics
Matches: 32,  Mismatches: 0, Indels: 9
        0.78            0.00        0.22

Matches are distributed among these distances:
  14    8  0.25
  15    6  0.19
  16    8  0.25
  17    2  0.06
  18    8  0.25

ACGTcount: A:0.04, C:0.22, G:0.00, T:0.75


Consensus pattern (14 bp):   
TTTTTTTCCTTTCT
Done.