Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021533.1 Corchorus olitorius cultivar O-4 contig21566, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6878
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32


Found at i:807 original size:8 final size:9

Alignment explanation


    Indices: 794--831  Score: 51
    Period size: 9  Copynumber: 4.3  Consensus size: 9

        784 TTAATTCATT

                     
        794 TAATTT-CA
          1 TAATTTCCA

                    *
        802 TAATTTCCC
          1 TAATTTCCA

                    *
        811 TAATTTCCT
          1 TAATTTCCA

                     
        820 TAATTTCCA
          1 TAATTTCCA

               
        829 TAA
          1 TAA

        832 GTAATTTGGG


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
   8    6  0.23
   9   20  0.77

ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47


Consensus pattern (9 bp):   
TAATTTCCA
Done.