Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021535.1 Corchorus olitorius cultivar O-4 contig21568, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31212

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1180--1365
25
7.5
25
87
2
250
34
31
22
11
1.89
1180--1366
73
2.5
75
87
3
288
34
31
21
11
1.90
1345--1397
23
2.3
23
83
9
72
16
39
26
16
1.91
1407--1477
34
2.1
34
89
5
108
28
21
25
25
1.99
5541--5634
45
2.1
45
95
0
170
36
17
5
41
1.72
6889--6934
23
2.0
23
100
0
92
34
8
30
26
1.86
6912--7003
41
2.2
43
94
5
161
39
5
22
32
1.77
8604--8634
3
10.3
3
92
0
53
0
3
32
64
1.09
13197--13267
34
2.1
34
84
2
90
56
9
9
23
1.62
16735--16837
54
2.0
49
87
9
143
32
13
11
42
1.80
17086--17116
11
2.7
11
95
5
53
54
3
6
35
1.42
19620--19660
20
2.0
22
90
9
68
34
19
24
21
1.97
19621--19669
20
2.3
20
83
13
55
30
24
26
18
1.98
22437--22585
75
2.0
73
80
5
165
38
14
25
20
1.91
22807--22900
45
2.2
43
90
7
147
38
22
5
34
1.77
23715--23751
14
2.7
14
84
16
51
48
0
2
48
1.15
27347--27381
12
3.0
12
91
4
54
0
0
8
91
0.42
31099--31168
36
1.9
36
97
0
131
61
7
8
22
1.49

Tables:   1

The End!