Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021536.1 Corchorus olitorius cultivar O-4 contig21569, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17379

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
640--704
2
34.5
2
78
17
59
52
3
0
44
1.16
3724--3779
28
2.0
28
100
0
112
32
21
10
35
1.88
6226--6268
22
2.0
22
100
0
86
32
6
13
46
1.71
7278--7313
3
12.0
3
100
0
72
33
0
0
66
0.92
9433--9661
116
2.0
116
97
1
433
41
11
16
30
1.84
11315--11342
2
14.0
2
100
0
56
50
0
0
50
1.00
13760--13821
27
2.3
26
84
15
74
45
0
8
46
1.32
13871--13897
2
13.5
2
100
0
54
48
0
0
51
1.00
14352--14807
22
21.0
22
68
13
207
35
16
10
37
1.83
14560--14621
21
2.9
22
78
4
63
35
12
11
40
1.80
14912--15332
22
19.0
22
69
13
155
34
16
9
40
1.80
15164--15325
66
2.5
65
78
8
175
37
17
8
37
1.79
15395--15544
22
6.8
21
79
9
129
38
18
8
35
1.81
15395--15541
66
2.2
66
84
7
190
38
17
8
36
1.81
16205--16251
22
2.1
22
88
7
69
25
17
10
46
1.79
16391--16440
22
2.3
22
78
0
55
34
14
16
36
1.88
16471--16539
22
3.1
22
77
4
68
37
13
11
37
1.80
16482--16782
22
13.9
22
73
12
158
36
15
9
38
1.80
16897--17314
22
18.9
22
69
12
178
34
15
9
40
1.80
16872--17110
44
5.4
44
74
9
175
34
12
10
42
1.77

Tables:   1

The End!