Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021539.1 Corchorus olitorius cultivar O-4 contig21572, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20744

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
234--294
30
2.0
30
100
0
122
44
3
26
26
1.69
464--1271
269
3.0
269
94
2
1451
36
15
13
34
1.87
1499--1555
30
1.9
30
100
0
114
45
1
26
26
1.63
6505--6551
18
2.6
18
86
6
60
44
2
2
51
1.25
7879--7981
51
2.0
51
81
7
120
23
24
14
37
1.92
10719--10754
6
6.5
6
81
18
51
36
13
0
50
1.43
10723--10757
10
3.4
10
88
4
52
40
11
0
48
1.39
10719--10754
16
2.2
17
95
5
65
36
13
0
50
1.43
11563--11639
25
3.5
23
81
13
74
41
7
15
35
1.76
11563--11661
21
4.5
21
75
17
78
42
8
16
33
1.77
11715--11770
22
2.5
22
77
5
60
41
14
14
30
1.85
11896--12367
22
21.6
22
71
10
263
38
9
15
36
1.80
12313--12385
22
3.3
22
78
0
65
42
9
16
31
1.80
12748--13423
339
2.0
344
85
4
925
30
17
17
33
1.94
13666--13705
2
19.5
2
89
5
62
47
5
0
47
1.24
18276--18321
17
2.7
17
93
0
74
41
0
0
58
0.98

Tables:   1

The End!