Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021542.1 Corchorus olitorius cultivar O-4 contig21575, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8105

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5513--5558
23
2.0
23
87
4
67
32
10
4
52
1.56
5698--5757
22
2.7
22
79
5
68
38
10
13
38
1.78
5722--5946
22
10.5
22
75
7
187
33
17
8
39
1.81
5724--5823
45
2.2
45
82
5
114
38
17
9
36
1.81
6433--6555
22
5.5
22
75
12
72
36
14
10
38
1.81
6476--6628
44
3.5
43
77
8
139
35
16
11
35
1.86
6478--6632
22
7.0
22
73
13
122
36
17
11
34
1.86
6479--6632
66
2.3
66
84
4
186
36
16
11
35
1.86
7062--7100
14
3.0
13
82
10
53
51
0
0
48
1.00
7774--7816
2
21.5
2
95
0
77
46
2
0
51
1.13

Tables:   1

The End!