genome.fa.s21544.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021544.1 Corchorus olitorius cultivar O-4 contig21577, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75036

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141--165	12	2.1	12	100	0	50	16	0	40	44	1.47
556--587	3	10.3	3	93	6	55	65	0	0	34	0.93
1619--1731	21	5.4	21	93	2	176	23	26	18	30	1.98
3032--3064	16	2.1	17	88	11	52	51	18	12	18	1.76
3050--3105	19	2.9	19	84	5	78	33	32	16	17	1.92
12497--12521	7	3.6	7	100	0	50	0	36	0	64	0.94
13774--13805	6	5.3	6	100	0	64	50	34	0	15	1.45
13835--13982	38	3.9	38	92	1	235	22	35	18	23	1.96
13835--13982	77	1.9	75	90	2	233	22	35	18	23	1.96
19783--19869	43	2.0	43	100	0	174	35	18	13	32	1.90
24027--24117	34	2.8	31	78	16	87	19	23	20	36	1.95
24042--24107	35	1.9	34	84	9	89	21	22	21	34	1.96
26141--26610	160	2.9	161	88	2	703	32	17	18	31	1.94
26141--26665	160	3.2	160	86	4	698	31	18	19	30	1.95
27472--27703	120	2.0	113	93	5	392	33	15	7	42	1.76
29700--29778	39	2.0	39	95	0	140	32	11	12	43	1.79
30050--30102	26	2.0	26	100	0	106	26	20	11	41	1.86
34509--34621	21	5.4	21	93	2	183	29	18	25	26	1.98
35489--35535	26	1.9	24	87	12	69	27	27	4	40	1.75
37991--38030	21	1.9	21	94	0	71	25	37	22	15	1.93
38013--38134	50	2.4	50	90	0	181	32	22	24	19	1.97
38686--38732	26	1.9	24	87	12	69	27	27	4	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40719--40785	33	2.0	34	91	0	93	38	20	8	31	1.84
40726--40830	33	3.2	32	85	9	131	42	23	7	25	1.80
40762--40866	33	3.2	33	81	8	115	44	21	6	26	1.77
43011--43053	22	2.0	22	85	0	59	23	23	32	20	1.98
43033--43153	50	2.4	50	89	5	174	19	21	23	34	1.96
45272--45346	37	2.0	37	100	0	150	40	12	29	18	1.87
45873--45992	50	2.4	50	88	2	179	34	23	23	19	1.97
45973--46014	22	1.9	22	85	0	57	23	33	21	21	1.97
50155--50185	15	2.1	15	100	0	62	32	12	25	29	1.93
50518--50562	23	1.9	24	90	4	74	40	6	17	35	1.76
60204--60228	7	3.6	7	100	0	50	0	36	0	64	0.94
68333--68913	47	12.4	47	91	0	905	29	18	4	46	1.69
73930--74000	27	2.7	27	86	2	108	36	25	23	14	1.92

Tables:   1

The End!