Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021547.1 Corchorus olitorius cultivar O-4 contig21580, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35745

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
865--916
26
2.0
26
96
0
95
36
13
7
42
1.73
871--930
26
2.3
26
85
2
75
31
13
10
45
1.76
4583--4646
28
2.3
28
84
10
87
17
14
37
31
1.89
6664--6855
94
2.0
94
89
0
294
42
11
16
29
1.83
13572--13609
11
3.5
11
85
10
51
57
2
0
39
1.12
13815--13857
20
2.2
20
83
8
52
18
34
0
46
1.50
16732--16774
22
2.0
22
90
0
68
20
23
32
23
1.98
16804--16845
21
2.0
21
100
0
84
19
19
38
23
1.93
16732--16916
71
2.6
71
90
4
284
20
22
27
30
1.98
20573--20619
26
1.9
23
87
12
67
40
4
27
27
1.75
21164--21206
22
2.0
22
85
0
59
23
20
32
23
1.98
21239--21278
21
1.9
21
94
0
71
15
22
37
25
1.93
27226--27265
15
2.6
16
92
4
64
15
7
10
67
1.41
33893--33941
25
2.0
25
84
8
64
18
6
2
73
1.14
33964--34092
4
34.0
4
70
13
85
28
5
0
65
1.20
33936--34017
19
4.1
19
72
18
76
29
9
0
60
1.28
33984--34093
27
4.4
27
71
19
94
29
6
0
63
1.25
34011--34099
19
4.2
20
72
17
63
30
4
1
64
1.21
33932--34095
46
3.6
46
91
1
251
29
7
0
62
1.26
34058--34127
28
2.5
28
83
4
79
27
7
4
61
1.41
34112--34173
24
2.7
23
83
13
76
20
12
1
64
1.36
33961--34151
8
25.2
8
69
12
66
27
8
2
62
1.35

Tables:   1

The End!