genome.fa.s21550.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021550.1 Corchorus olitorius cultivar O-4 contig21583, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47694

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8046--8145	33	3.1	31	84	9	119	43	24	8	25	1.81
8082--8193	33	3.4	33	80	7	120	44	18	10	25	1.82
10490--10532	21	2.1	21	86	4	61	27	20	18	32	1.96
12749--12922	92	1.9	92	89	3	269	27	17	21	33	1.96
12962--13363	54	7.4	54	80	5	436	26	18	23	31	1.97
12962--13363	161	2.5	162	81	8	501	26	18	23	31	1.97
12964--13362	215	1.9	216	88	1	604	27	18	23	31	1.97
13342--13969	35	17.6	35	88	3	819	26	11	18	43	1.85
13935--14235	54	5.6	54	84	3	360	27	20	22	29	1.98
13935--14235	159	1.9	160	83	4	392	27	20	22	29	1.98
14341--14474	21	6.4	21	94	1	200	29	17	26	26	1.97
15275--15501	54	4.2	54	83	3	262	25	17	24	32	1.97
15275--15529	108	2.4	108	79	5	266	26	18	23	31	1.97
17096--17293	4	52.5	4	67	12	89	27	7	1	64	1.28
17127--17218	19	4.5	20	73	23	75	27	8	0	64	1.23
17204--17294	27	3.7	27	70	22	99	30	5	2	61	1.31
17097--17303	46	4.6	46	87	5	266	27	6	1	64	1.27
17139--17368	15	15.0	15	70	16	125	26	9	1	62	1.35
17150--17351	8	26.9	8	71	11	81	27	8	1	61	1.37
17312--17377	24	2.8	24	86	9	82	21	12	1	65	1.34
17966--18025	29	2.0	30	83	6	77	38	10	18	33	1.84
21580--21635	20	2.7	22	76	18	66	58	5	10	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23374--23453	29	2.8	29	96	0	142	55	10	17	17	1.69
24505--24551	26	1.9	24	87	12	69	27	27	4	40	1.75
34144--34204	16	3.9	15	82	8	68	60	8	13	18	1.56
38163--38203	21	2.0	21	95	0	73	14	43	29	12	1.82
39773--39811	20	2.0	20	90	10	62	48	0	2	48	1.15
40179--40214	19	1.9	18	88	5	54	33	22	2	41	1.68
40179--40225	11	4.7	10	80	17	53	31	21	6	40	1.78
47277--47352	27	2.7	27	89	6	107	18	11	25	44	1.83

Tables:   1

The End!