Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021555.1 Corchorus olitorius cultivar O-4 contig21588, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 996

Length: 1660
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30


Found at i:954 original size:21 final size:21

Alignment explanation


    Indices: 928--969  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        918 GCATCTTAGA

                                 
        928 CAACTCCGATGAGCTTGAAAC
          1 CAACTCCGATGAGCTTGAAAC

                  *              
        949 CAACTCTGATGAGCTTGAAAC
          1 CAACTCCGATGAGCTTGAAAC

        970 TTCTTCCTTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21


Consensus pattern (21 bp):   
CAACTCCGATGAGCTTGAAAC

Found at i:1408 original size:20 final size:21

Alignment explanation


    Indices: 1385--1428  Score: 54
    Period size: 22  Copynumber: 2.1  Consensus size: 21

       1375 ATCTTGAAGA

                                 
       1385 ATTTAAAG-CCATCGGAGATC
          1 ATTTAAAGCCCATCGGAGATC

                *         *       
       1405 ATTTGAAGCCCCATTGGAGATC
          1 ATTTAAAG-CCCATCGGAGATC

              
       1427 AT
          1 AT

       1429 CAACAAAGGA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  20    7  0.35
  22   13  0.65

ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27


Consensus pattern (21 bp):   
ATTTAAAGCCCATCGGAGATC
Done.