Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021558.1 Corchorus olitorius cultivar O-4 contig21591, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60749

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--61
2
31.5
2
93
6
108
0
52
0
47
1.00
4799--4846
24
2.0
24
87
0
69
6
33
4
56
1.44
8425--8464
15
2.6
15
88
4
53
62
12
10
15
1.54
11568--11794
67
3.3
69
90
1
341
26
23
29
20
1.99
17118--17148
1
31.0
1
100
0
62
100
0
0
0
0.00
22165--22217
16
3.2
16
76
5
61
5
33
3
56
1.41
24985--25052
33
2.1
33
100
0
136
11
35
14
38
1.83
28924--29085
85
1.9
86
89
3
256
33
11
1
53
1.47
29100--29130
6
5.3
6
92
7
55
35
16
0
48
1.46
29458--29496
14
2.9
13
80
3
51
41
2
2
53
1.28
30935--30969
16
2.2
16
89
0
52
8
14
37
40
1.76
33856--33897
20
2.2
20
83
12
52
40
19
11
28
1.87
49175--49270
39
2.5
38
88
3
131
32
13
16
37
1.88
53328--53396
28
2.3
30
82
9
88
43
14
26
15
1.85
54129--54173
16
2.8
16
82
0
54
24
0
8
66
1.20
57243--57285
11
3.9
11
84
0
59
18
27
16
37
1.92
57241--57287
22
2.1
22
92
0
76
17
29
14
38
1.89
59394--59445
21
2.5
22
93
6
90
36
3
11
48
1.58

Tables:   1

The End!