Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021561.1 Corchorus olitorius cultivar O-4 contig21594, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19994

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--39
2
19.5
2
100
0
78
51
0
0
48
1.00
1531--1643
58
1.9
58
85
3
156
33
13
20
32
1.91
2289--2358
36
1.9
36
88
0
104
22
10
8
58
1.57
3151--3197
25
1.9
24
95
4
85
55
8
6
29
1.55
3779--3831
21
2.5
20
76
8
52
50
5
7
35
1.54
4308--4332
12
2.1
12
100
0
50
32
0
0
68
0.90
5021--5300
142
2.0
136
92
4
461
39
10
13
36
1.79
11529--11563
11
3.2
11
91
0
61
80
17
2
0
0.84
16729--16786
19
2.9
19
87
5
80
36
12
22
29
1.90
17117--17150
7
4.9
7
100
0
68
29
14
14
41
1.86
17602--17755
33
4.7
32
73
9
98
8
31
45
14
1.74
18171--18226
27
2.1
27
96
0
103
21
14
42
21
1.88
18510--18551
20
2.1
20
95
0
75
52
0
4
42
1.22

Tables:   1

The End!