Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021564.1 Corchorus olitorius cultivar O-4 contig21597, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1037
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30


Found at i:638 original size:51 final size:50

Alignment explanation


    Indices: 537--638  Score: 118
    Period size: 51  Copynumber: 2.0  Consensus size: 50

        527 GTTCTTCATA

                                                     * **     
        537 TTTTCCTTGTTTAGATCTTGTCTCCGAACAAACAAACACTCTTTTAGTGT
          1 TTTTCCTTGTTTAGATCTTGTCTCCGAACAAACAAACACTCGTACAGTGT

                                        *   *                    
        587 TTTTCTCTTGTTTCA-ATCTTGTCTCCGGACATACAAACACT-GTACACGTGT
          1 TTTTC-CTTGTTT-AGATCTTGTCTCCGAACAAACAAACACTCGTACA-GTGT

             
        638 T
          1 T

        639 CTTCATTCAG


Statistics
Matches: 44,  Mismatches: 5, Indels: 5
        0.81            0.09        0.09

Matches are distributed among these distances:
  50    7  0.16
  51   36  0.82
  52    1  0.02

ACGTcount: A:0.23, C:0.24, G:0.13, T:0.41


Consensus pattern (50 bp):   
TTTTCCTTGTTTAGATCTTGTCTCCGAACAAACAAACACTCGTACAGTGT
Done.