Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021567.1 Corchorus olitorius cultivar O-4 contig21600, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53420

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--76
3
25.0
3
97
2
143
34
0
0
65
0.93
614--652
3
12.7
3
83
5
51
66
25
5
2
1.25
619--655
9
4.1
9
96
0
65
67
24
8
0
1.17
6390--6706
31
10.7
30
89
5
445
32
19
18
29
1.96
16298--16330
14
2.3
15
89
5
50
12
18
0
69
1.18
23347--23386
15
2.6
16
88
4
55
62
12
10
15
1.54
28048--28113
27
2.4
27
97
0
123
39
27
15
18
1.90
28142--28248
53
2.0
53
98
0
205
25
25
28
21
1.99
40346--40611
53
5.1
53
74
8
265
48
14
7
29
1.72
40317--40611
156
1.9
157
96
0
547
46
13
8
32
1.72
41413--41444
16
2.0
16
93
0
55
53
0
0
46
1.00
41397--41444
19
2.5
19
83
10
62
47
0
0
52
1.00
41453--41508
29
1.9
29
82
13
71
50
3
0
46
1.19
47849--47876
1
28.0
1
100
0
56
0
0
0
100
0.00

Tables:   1

The End!