Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021570.1 Corchorus olitorius cultivar O-4 contig21603, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12439
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.27


Found at i:10203 original size:28 final size:29

Alignment explanation


    Indices: 10159--10213  Score: 76
    Period size: 28  Copynumber: 1.9  Consensus size: 29

      10149 ATGATTTAGG

                      *                  
      10159 GGTTACTAACTCCCTTTT-TTTCTTTTGA
          1 GGTTACTAACACCCTTTTGTTTCTTTTGA

                        *         *    
      10187 GGTTACTAACACTCTTTTGTTTTTTTT
          1 GGTTACTAACACCCTTTTGTTTCTTTT

      10214 AAGAGGGACA


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  28   16  0.70
  29    7  0.30

ACGTcount: A:0.15, C:0.18, G:0.11, T:0.56


Consensus pattern (29 bp):   
GGTTACTAACACCCTTTTGTTTCTTTTGA

Found at i:10294 original size:4 final size:4

Alignment explanation


    Indices: 10287--10313  Score: 54
    Period size: 4  Copynumber: 6.8  Consensus size: 4

      10277 CTTTTTTTTT

                                             
      10287 ATTA ATTA ATTA ATTA ATTA ATTA ATT
          1 ATTA ATTA ATTA ATTA ATTA ATTA ATT

      10314 TTTTTCAAAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (4 bp):   
ATTA

Done.