genome.fa.s21573.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021573.1 Corchorus olitorius cultivar O-4 contig21606, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47652

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12--1043	439	2.4	436	81	5	1206	43	12	13	30	1.81
8485--8578	22	4.3	21	79	11	100	41	17	9	31	1.81
8591--8637	22	2.0	22	84	8	58	42	12	2	42	1.55
8810--8869	22	2.5	23	78	13	68	35	16	6	41	1.75
8830--8980	22	6.9	21	71	7	86	35	13	9	41	1.76
8880--8981	44	2.3	43	78	8	107	34	10	10	44	1.74
8964--9046	22	3.8	22	73	6	87	38	9	13	38	1.77
8942--9065	44	2.8	43	76	4	122	33	10	14	41	1.80
9251--9313	29	2.1	29	85	8	83	39	23	12	23	1.89
12544--12604	22	2.8	22	80	9	70	34	11	11	42	1.77
12618--12669	23	2.3	23	83	3	61	42	15	7	34	1.75
12630--12701	21	3.4	21	79	7	65	40	19	5	34	1.75
13502--13533	16	1.9	16	93	6	55	87	0	12	0	0.54
13501--13539	19	2.1	18	95	4	69	87	0	12	0	0.55
13501--13535	10	3.6	10	88	3	54	88	0	11	0	0.51
13674--13716	18	2.3	18	80	4	50	81	0	13	4	0.84
13681--13736	13	4.2	13	78	10	60	78	0	14	7	0.95
14661--14728	27	2.5	27	80	7	75	25	19	14	41	1.89
15114--15158	14	3.5	12	84	9	54	31	2	11	55	1.47
20436--20584	74	2.0	73	94	1	262	35	19	16	28	1.93
20684--20718	17	2.1	17	100	0	70	37	22	0	40	1.55
22974--23104	65	2.0	64	98	1	253	39	23	14	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28542--28609	33	2.1	33	97	0	127	39	7	8	44	1.64
29329--29405	28	2.8	28	88	2	111	23	16	20	38	1.92
29383--29435	26	2.0	26	88	0	79	20	13	26	39	1.89
40353--40559	77	2.7	77	90	1	308	33	29	15	20	1.94
41616--41778	37	4.3	37	87	3	209	16	40	17	25	1.90
41675--41777	20	5.3	20	66	15	72	16	42	18	22	1.89
42456--42596	75	1.9	75	92	0	237	42	15	23	18	1.88
42637--42696	16	4.0	16	77	16	74	38	20	23	18	1.93
42716--42978	16	16.1	16	71	6	152	30	36	20	12	1.90
42719--43023	33	9.3	33	77	5	199	29	35	20	13	1.92
42867--42998	65	2.0	65	86	0	183	25	37	23	13	1.92
42878--42998	16	7.4	16	74	3	98	24	37	23	14	1.92
43014--43099	24	3.6	24	70	0	82	44	23	24	8	1.80
43013--43118	48	2.2	48	94	0	194	43	21	24	10	1.84
43038--43117	24	3.3	24	71	0	88	45	18	25	11	1.83
43274--43405	50	2.6	50	80	2	131	34	18	24	22	1.96
43363--43450	16	5.4	15	77	15	86	37	14	21	26	1.92
43368--43539	51	3.3	51	81	2	191	36	16	23	23	1.94
43425--43503	35	2.3	35	86	0	113	37	18	24	18	1.94
43479--43547	19	3.8	19	71	11	63	37	14	27	20	1.91
43497--43685	35	5.4	35	77	4	159	37	15	22	24	1.93
43588--43644	16	3.4	16	73	21	53	38	17	15	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43377--43628	89	2.9	86	80	5	288	37	16	23	23	1.94
43493--43680	70	2.7	70	81	2	200	37	15	22	23	1.93
44008--44095	27	3.3	26	85	6	104	40	26	13	19	1.88
44022--44107	27	3.2	26	86	5	100	44	22	13	19	1.86
46508--46713	77	2.7	77	89	0	297	34	29	15	19	1.93
47354--47459	28	3.7	28	82	6	106	16	14	24	44	1.85

Tables:   1

The End!