genome.fa.s21576.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021576.1 Corchorus olitorius cultivar O-4 contig21609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54008

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473--585	21	5.4	21	91	2	158	28	18	26	26	1.98
593--645	21	2.5	21	100	0	106	30	18	18	32	1.96
3690--3754	27	2.4	27	84	0	85	36	27	18	16	1.93
22424--22460	18	2.1	18	89	0	56	37	10	0	51	1.37
22584--22635	25	2.1	24	83	16	63	48	1	3	46	1.31
22777--22825	21	2.3	21	92	0	80	34	24	6	34	1.80
22941--22985	21	2.1	21	83	0	54	13	40	8	37	1.76
30602--30699	38	2.6	37	90	4	144	17	35	34	12	1.87
30612--30726	32	3.2	37	82	14	143	18	33	33	13	1.90
30743--30778	13	2.5	15	82	17	58	58	0	0	41	0.98
32609--32688	41	1.9	43	92	5	137	28	0	12	58	1.34
32618--32687	13	5.2	13	76	19	63	28	0	12	58	1.35
32669--32703	17	2.1	17	94	0	61	31	0	8	60	1.27
32763--32818	28	2.0	28	92	0	94	19	23	41	16	1.90
34253--34376	65	1.9	64	86	1	176	19	25	28	26	1.99
34564--34611	24	2.0	24	91	0	78	14	31	6	47	1.69
36130--36168	17	2.6	14	78	21	51	33	10	5	51	1.58
36133--36167	17	2.1	17	100	0	70	28	11	5	54	1.59
39975--40069	35	2.7	35	78	0	109	31	32	12	23	1.92
40046--40192	29	5.1	29	75	1	125	27	29	13	29	1.94
41827--41900	37	2.0	37	100	0	148	10	16	48	24	1.77
45184--45222	11	3.9	11	75	25	50	66	0	20	12	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45186--45221	18	2.0	18	100	0	72	66	0	22	11	1.22
48109--48147	20	2.0	19	85	5	51	15	46	5	33	1.68
49089--49147	19	3.1	19	83	16	70	37	1	0	61	1.07
49095--49148	23	2.3	23	87	6	74	35	1	0	62	1.06
50187--50263	22	3.6	21	82	5	91	41	10	7	40	1.68
50183--50285	43	2.4	44	88	1	145	41	11	8	37	1.73
50183--50379	22	9.1	21	69	13	89	35	13	9	42	1.76
50311--50379	20	3.3	20	79	4	75	23	14	11	50	1.75
51027--51094	33	2.1	33	86	2	93	32	14	16	36	1.89
51165--51209	20	2.2	20	88	7	65	24	11	20	44	1.83

Tables:   1

The End!