Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021577.1 Corchorus olitorius cultivar O-4 contig21610, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48377

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1996--2126
56
2.3
56
84
2
156
58
6
5
29
1.47
2728--2775
23
2.1
23
100
0
96
37
18
8
35
1.81
2970--3032
29
2.2
29
82
0
81
39
23
6
30
1.80
7097--7142
24
2.0
23
83
12
58
69
6
13
10
1.35
7147--7199
15
3.3
17
80
14
60
52
5
0
41
1.25
7155--7201
18
2.6
18
90
6
69
53
6
0
40
1.27
9952--10000
20
2.3
23
75
20
68
40
8
6
44
1.59
9957--10007
20
2.5
20
96
0
93
41
9
7
41
1.67
15932--16154
74
3.0
74
89
1
324
37
17
15
30
1.91
20672--20719
24
2.0
24
100
0
96
62
16
8
12
1.53
25281--25363
21
4.2
21
63
18
52
36
12
3
48
1.58
26166--26225
26
2.3
26
94
0
102
35
13
11
40
1.81
26232--26282
20
2.7
19
72
6
50
37
11
3
47
1.59
26290--26331
21
2.0
21
85
0
57
45
16
2
35
1.61
30680--30726
25
2.0
24
84
12
62
31
0
14
53
1.42
31115--31149
11
3.2
11
83
0
52
77
17
5
0
0.96
31120--31178
16
3.7
16
72
17
50
69
18
10
1
1.25
31762--31788
14
1.9
14
100
0
54
22
14
22
40
1.90
33107--33142
19
1.9
18
88
5
54
41
8
22
27
1.82
33744--33780
18
2.0
19
94
5
67
10
13
10
64
1.49
39102--39136
12
2.9
12
82
0
52
5
5
5
82
0.93
39554--39579
3
8.7
3
100
0
52
30
0
0
69
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46808--47118
157
2.0
157
96
0
568
38
14
16
29
1.89

Tables:   1

The End!