Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021579.1 Corchorus olitorius cultivar O-4 contig21612, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3415

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107--176
36
1.9
36
91
0
113
21
10
8
60
1.55
537--626
25
3.6
25
96
0
171
31
13
3
52
1.56
819--892
3
24.7
3
100
0
148
33
0
0
66
0.92
1319--1399
39
2.0
40
88
2
119
37
6
8
48
1.59
1618--1668
2
25.0
2
88
4
75
49
0
5
45
1.26
1940--1969
2
15.0
2
100
0
60
50
0
0
50
1.00
2032--2108
22
3.6
21
84
5
91
41
11
7
38
1.71
2028--2130
43
2.4
44
85
1
127
42
12
8
35
1.74
2160--2198
20
1.9
21
89
5
62
25
7
10
56
1.59

Tables:   1

The End!