Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021583.1 Corchorus olitorius cultivar O-4 contig21616, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1760
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38


Found at i:390 original size:20 final size:20

Alignment explanation


    Indices: 367--413  Score: 94
    Period size: 20  Copynumber: 2.4  Consensus size: 20

        357 CTTGGCGGAC

                                
        367 CATGGTTTGATTTGGATCCA
          1 CATGGTTTGATTTGGATCCA

                                
        387 CATGGTTTGATTTGGATCCA
          1 CATGGTTTGATTTGGATCCA

                   
        407 CATGGTT
          1 CATGGTT

        414 CCTCGCTCCA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   27  1.00

ACGTcount: A:0.19, C:0.15, G:0.26, T:0.40


Consensus pattern (20 bp):   
CATGGTTTGATTTGGATCCA
Done.