Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021586.1 Corchorus olitorius cultivar O-4 contig21619, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41886

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1652--1947
22
13.3
22
68
13
117
41
10
15
31
1.81
1993--2043
22
2.3
22
90
6
77
33
3
19
43
1.70
2074--2240
22
7.6
22
75
2
147
30
13
16
39
1.87
2074--2239
66
2.5
66
82
4
174
30
13
16
39
1.86
4127--4151
9
2.8
9
100
0
50
24
56
0
20
1.43
5327--5405
39
2.0
39
95
0
140
46
20
7
25
1.76
5719--5864
73
2.0
73
94
0
256
36
25
15
21
1.93
6949--6999
25
2.0
25
96
0
93
37
23
1
37
1.66
10197--10235
20
2.0
20
85
10
53
28
5
2
64
1.28
11722--11830
36
3.0
37
82
8
150
32
18
14
34
1.91
11717--11823
37
2.9
36
82
8
144
31
16
14
36
1.90
11795--12140
52
6.6
52
87
2
460
29
16
13
40
1.87
13088--13298
22
9.5
22
74
12
173
34
9
18
37
1.83
13089--14301
44
28.3
43
65
19
242
38
9
16
35
1.82
13342--13417
22
3.5
21
73
8
62
42
7
15
34
1.76
13440--14301
22
39.2
22
66
18
202
39
9
16
34
1.81
13918--14023
23
4.7
23
82
4
110
39
8
15
36
1.77
23763--23840
30
2.6
30
84
6
97
44
14
24
16
1.84
30432--30478
21
2.2
21
96
0
85
27
29
8
34
1.87
32076--32109
18
1.9
17
94
5
59
61
8
17
11
1.54
32685--32745
30
2.0
30
84
6
79
29
16
6
47
1.72

Tables:   1

The End!