Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021587.1 Corchorus olitorius cultivar O-4 contig21620, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52200

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3131--3177
22
2.1
22
84
7
60
61
2
12
23
1.42
3055--3238
92
2.0
93
91
1
298
52
3
13
31
1.56
3275--3336
31
2.0
31
96
0
115
40
6
24
29
1.80
4334--4367
17
2.0
17
100
0
68
41
17
11
29
1.85
7818--7849
14
2.3
14
94
0
55
53
15
12
18
1.73
8188--8222
5
6.6
5
87
12
52
0
37
57
5
1.23
8191--8223
11
3.0
11
100
0
66
0
36
54
9
1.32
8188--8222
16
2.2
16
90
10
54
0
37
57
5
1.23
24922--24954
1
33.0
1
100
0
66
100
0
0
0
0.00
29873--29904
16
2.0
16
93
0
55
56
0
9
34
1.32
35126--35155
1
30.0
1
100
0
60
0
0
0
100
0.00
42208--42266
21
2.9
21
82
5
68
37
11
16
33
1.86
43245--43291
18
2.6
18
79
0
58
36
10
27
25
1.89
49746--49828
21
4.3
21
77
14
81
27
9
24
38
1.86
49760--49830
18
3.8
18
85
7
90
26
9
26
36
1.88
50821--50889
32
2.2
32
97
2
131
33
31
8
26
1.87

Tables:   1

The End!