Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021597.1 Corchorus olitorius cultivar O-4 contig21630, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21551

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43--184
73
2.0
71
87
5
205
27
23
23
25
2.00
1850--1898
22
2.3
22
85
3
64
24
16
8
51
1.71
1858--1901
22
2.0
22
95
0
79
27
13
11
47
1.77
5522--5606
15
5.9
15
74
10
79
52
4
21
21
1.64
5578--5620
21
2.1
20
95
4
77
53
4
18
23
1.63
5522--5651
50
2.8
46
82
12
126
52
4
20
22
1.65
5561--5668
29
3.6
29
81
15
105
53
4
18
23
1.63
5718--5758
15
2.8
16
89
10
61
51
7
19
21
1.71
5768--5848
21
3.8
21
78
12
92
55
3
17
23
1.58
5816--5877
29
2.2
28
85
2
79
56
3
14
25
1.53
5925--5992
15
4.7
15
72
7
50
52
5
19
22
1.66
6014--6052
9
4.3
9
81
12
53
66
0
17
15
1.25
6039--6146
34
3.2
34
89
5
175
55
2
15
25
1.54
6092--6173
34
2.3
34
83
6
92
57
6
17
19
1.60
6170--6236
26
2.5
27
82
7
82
61
1
19
17
1.43
12860--12958
31
3.3
31
80
5
121
26
23
15
35
1.94
21462--21537
2
37.5
2
97
2
143
48
0
50
1
1.09

Tables:   1

The End!