Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021600.1 Corchorus olitorius cultivar O-4 contig21633, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53900

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104--171
21
3.3
21
93
6
113
25
27
17
29
1.97
504--540
8
4.5
8
96
3
65
0
0
10
89
0.49
662--699
2
19.0
2
100
0
76
50
50
0
0
1.00
1723--1770
23
2.3
21
82
13
55
75
2
20
2
1.02
2339--2388
26
1.9
26
91
0
82
42
36
14
8
1.74
4377--4438
5
12.4
5
83
6
81
80
0
19
0
0.71
4372--4485
15
7.4
16
72
13
96
75
0
21
1
0.95
4373--4447
20
3.9
18
75
16
71
78
0
21
0
0.75
4377--4488
47
2.4
47
84
8
151
75
0
21
1
0.94
18308--18356
14
3.6
14
76
15
50
63
2
22
12
1.39
22601--22640
20
2.0
20
100
0
80
35
25
20
20
1.96
29291--29351
31
2.0
31
86
0
86
52
21
8
18
1.71
32022--32173
28
5.5
28
88
0
216
40
25
17
16
1.90
33252--33281
14
2.1
14
93
0
51
33
10
6
50
1.62
33792--33817
6
4.3
6
100
0
52
0
0
50
50
1.00
33989--34037
23
2.1
23
84
0
62
51
2
2
44
1.24
40331--40371
21
2.0
21
85
0
55
19
0
24
56
1.42
40670--40698
15
2.0
15
93
6
51
41
24
13
20
1.89
41786--41810
13
1.9
13
100
0
50
36
0
8
56
1.29
45187--45213
10
2.7
10
100
0
54
40
40
11
7
1.69
45374--45412
18
2.2
18
90
4
62
38
20
5
35
1.75
47295--47320
2
13.0
2
100
0
52
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49283--49321
18
2.2
18
90
0
60
25
17
0
56
1.41
49723--49775
22
2.4
22
83
0
70
62
9
7
20
1.50
51052--51087
19
1.9
18
88
5
54
30
22
8
38
1.83
52609--52665
30
1.9
29
89
10
89
59
5
14
21
1.54

Tables:   1

The End!