Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021603.1 Corchorus olitorius cultivar O-4 contig21636, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15885

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
997--1044
25
1.9
25
95
0
87
39
10
18
31
1.85
1920--1963
21
2.1
21
82
0
52
38
15
15
29
1.89
2146--2213
19
3.5
19
97
2
127
16
23
50
10
1.75
3526--3646
26
4.2
26
70
23
91
22
20
3
53
1.60
3781--3945
21
7.9
21
75
12
160
20
23
4
51
1.66
3808--3837
15
2.1
14
93
6
51
20
20
3
56
1.56
3788--3889
7
14.6
7
73
15
59
19
22
3
53
1.61
3762--3979
41
5.4
41
81
10
236
21
22
5
50
1.69
4440--4476
19
1.9
19
100
0
74
54
10
5
29
1.57
7083--7160
40
2.0
40
94
0
138
24
16
19
39
1.91
7785--7851
16
3.9
16
71
22
55
58
11
16
13
1.64
7768--7839
36
2.0
36
100
0
144
55
13
16
13
1.69
7768--7827
20
3.2
20
69
26
67
56
15
15
13
1.67
12647--12688
15
2.7
15
92
3
66
11
9
14
64
1.50
12861--12962
29
3.4
29
93
2
168
17
13
36
32
1.89

Tables:   1

The End!