Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021605.1 Corchorus olitorius cultivar O-4 contig21638, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2012
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32


Found at i:663 original size:91 final size:91

Alignment explanation


    Indices: 508--693  Score: 372
    Period size: 91  Copynumber: 2.0  Consensus size: 91

        498 TGAATGGCTA

                                                                             
        508 TGAATGACAATGCCATTTGTGTTGCCGTTAGAGGTTGATGCAATGAGAGCTTTCGGCATCCTTGA
          1 TGAATGACAATGCCATTTGTGTTGCCGTTAGAGGTTGATGCAATGAGAGCTTTCGGCATCCTTGA

                                      
        573 TTGACATTGTTTCTTTCTTGCCCTTG
         66 TTGACATTGTTTCTTTCTTGCCCTTG

                                                                             
        599 TGAATGACAATGCCATTTGTGTTGCCGTTAGAGGTTGATGCAATGAGAGCTTTCGGCATCCTTGA
          1 TGAATGACAATGCCATTTGTGTTGCCGTTAGAGGTTGATGCAATGAGAGCTTTCGGCATCCTTGA

                                      
        664 TTGACATTGTTTCTTTCTTGCCCTTG
         66 TTGACATTGTTTCTTTCTTGCCCTTG

                
        690 TGAA
          1 TGAA

        694 GCATCCTCAT


Statistics
Matches: 95,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  91   95  1.00

ACGTcount: A:0.19, C:0.18, G:0.24, T:0.38


Consensus pattern (91 bp):   
TGAATGACAATGCCATTTGTGTTGCCGTTAGAGGTTGATGCAATGAGAGCTTTCGGCATCCTTGA
TTGACATTGTTTCTTTCTTGCCCTTG
Done.