Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021606.1 Corchorus olitorius cultivar O-4 contig21639, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7163
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31


Found at i:7108 original size:26 final size:26

Alignment explanation


    Indices: 7070--7129  Score: 106
    Period size: 26  Copynumber: 2.4  Consensus size: 26

       7060 AGGTATTCCA

                                      
       7070 TCTTTT-C-CTTTGCCCTTAATGTCT
          1 TCTTTTGCACTTTGCCCTTAATGTCT

                                      
       7094 TCTTTTGCACTTTGCCCTTAATGTCT
          1 TCTTTTGCACTTTGCCCTTAATGTCT

                      
       7120 TCTTTTGCAC
          1 TCTTTTGCAC

       7130 AAGAGTCTTG


Statistics
Matches: 34,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
  24    6  0.18
  25    1  0.03
  26   27  0.79

ACGTcount: A:0.10, C:0.28, G:0.10, T:0.52


Consensus pattern (26 bp):   
TCTTTTGCACTTTGCCCTTAATGTCT
Done.